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Xena Browser
Xena Browser
Data Resource:  Xena Browser
Point of Contact:  
Mary Goldman,  
Collection

About This Dataset
UCSC Xena is a visual exploration resource for both public and private omics data, supported through the web-based Xena Browser and multiple turn-key Xena Hubs. This unique archecture allows researchers to view their own data securely, using private Xena Hubs, simultaneously visualizing large public cancer genomics datasets, including TCGA and the GDC. Data integration occurs only within the Xena Browser, keeping private data private. Xena supports virtually any functional genomics data, including SNVs, INDELs, large structural variants, CNV, expression, DNA methylation, ATAC-seq signals, and phenotypic annotations. Browser features include the Visual Spreadsheet, survival analyses, powerful filtering and subgrouping, statistical analyses, genomic signatures, and bookmarks. Xena differentiates itself from other genomics tools, including its predecessor, the UCSC Cancer Genomics Browser, by its ability to easily and securely view public and private data, its high performance, its broad data type support, and many unique features.
Core Data Elements
Case Disease Diagnosis
Acute Lymphoblastic Leukemia (); Acute Myeloid Leukemia (); Adrenocortical Cancer (); Bile Duct Cancer (); Bladder Cancer (); Breast Cancer (); Cervical Cancer (); Clear Cell Sarcoma of the Kidney (); Colon and Rectal Cancer (); Colon Cancer (); Endometrioid Cancer (); Esophageal Cancer (); Glioblastoma (); Glioma (); Head and Neck Cancer (); Kidney Chromophobe (); Kidney Clear Cell Carcinoma (); Kidney Papillary Cell Carcinoma (); Large B-Cell Lymphoma (); Liver Cancer (); Lower Grade Glioma (); Lung Adenocarcinoma (); Lung Cancer (); Lung Squamous Cell Carcinoma (); Melanoma (); Mesothelioma (); Neuroblastoma (); Ocular Melanomas (); Osteosarcoma (); Ovarian Cancer (); Pancreatic Cancer (); Pediatric Diffuse Intrinsic Pontine Gliomas (); Pheochromocytoma & Paraganglioma (); Prostate Cancer (); Rectal Cancer (); Sarcoma (); Stomach Cancer (); Testicular Cancer (); Thymoma (); Thyroid Cancer (); Uterine Carcinosarcoma (); Wilms Tumor ()
Additional Data Elements
DATA REPOSITORY
Grant Information
U24CA180951
Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Canc
U24CA210974
Visualization hub for genomics data exploration and translational discovery
Published In
https://doi.org/10.1038/s41587-020-0546-8